Downloads

Raw data and processed data for download.


Raw data

File NameFile SizeSampleSample ClassAssay
GM12878_fresh.R1.fastq.gz
34 GBGM12878_freshcell linebulk FOODIE-seq
GM12878_fresh.R2.fastq.gz
36 GBGM12878_freshcell linebulk FOODIE-seq
GM12878_fixed.R1.fastq.gz
15 GBGM12878_fixedcell linebulk FOODIE-seq
GM12878_fixed.R2.fastq.gz
16 GBGM12878_fixedcell linebulk FOODIE-seq
K562_heatshock.R1.fastq.gz
5 GBK562_heatshockcell linebulk FOODIE-seq
K562_heatshock.R2.fastq.gz
4.9 GBK562_heatshockcell linebulk FOODIE-seq
K562_heatshock_control.R1.fastq.gz
5.2 GBK562_heatshock_controlcell linebulk FOODIE-seq
K562_heatshock_control.R2.fastq.gz
5.2 GBK562_heatshock_controlcell linebulk FOODIE-seq
single-cell_human_Hela.tar.gz
47 GBsingle-cell_human_Hela (bundled)cell linesingle-cell FOODIE
single-cell_human_HEK293T.tar.gz
53 GBsingle-cell_human_HEK293T (bundled)cell linesingle-cell FOODIE
single-cell_human_GM.tar.gz
57 GBsingle-cell_human_GM12878 (bundled)cell linesingle-cell FOODIE
single-cell_human_K562.tar.gz
39 GBsingle-cell_human_K562 (bundled)cell linesingle-cell FOODIE
GM12878_coop_PE250_R1.fastq.gz
22 GBGM12878_coop_PE250cell linebulk FOODIE-seq
GM12878_coop_PE250_R2.fastq.gz
22 GBGM12878_coop_PE250cell linebulk FOODIE-seq
GM12878_coop_PE150_R1.fastq.gz
24 GBGM12878_coop_PE150cell linebulk FOODIE-seq
GM12878_coop_PE150_R2.fastq.gz
25 GBGM12878_coop_PE150cell linebulk FOODIE-seq

Processed data

File NameFile SizeSampleSample ClassAssay
GM12878_fresh.sites.depth.bw
4.2 GBGM12878_freshcell linebulk FOODIE-seq
GM12878_fresh.sites.ratio.bw
700 MBGM12878_freshcell linebulk FOODIE-seq
GM12878_fresh.bam
26 GBGM12878_freshcell linebulk FOODIE-seq
GM12878_fresh.bam.bai
5.6 MBGM12878_freshcell linebulk FOODIE-seq
GM12878_fixed.sites.depth.bw
3.7 GBGM12878_fixedcell linebulk FOODIE-seq
GM12878_fixed.sites.ratio.bw
710 MBGM12878_fixedcell linebulk FOODIE-seq
GM12878_fixed.bam
23 GBGM12878_fixedcell linebulk FOODIE-seq
GM12878_fixed.bam.bai
6.8 MBGM12878_fixedcell linebulk FOODIE-seq
K562_heatshock.sites.depth.bw
625 MBK562_heatshockcell linebulk FOODIE-seq
K562_heatshock.sites.ratio.bw
32 MBK562_heatshockcell linebulk FOODIE-seq
K562_heatshock.bam
4.4 GBK562_heatshockcell linebulk FOODIE-seq
K562_heatshock.bam.bai
2.6 MBK562_heatshockcell linebulk FOODIE-seq
K562_heatshock_control.sites.depth.bw
1.5 GBK562_heatshock_controlcell linebulk FOODIE-seq
K562_heatshock_control.sites.ratio.bw
32 MBK562_heatshock_controlcell linebulk FOODIE-seq
K562_heatshock_control.bam
1.6 GBK562_heatshock_controlcell linebulk FOODIE-seq
K562_heatshock_control.bam.bai
3.3 MBK562_heatshock_controlcell linebulk FOODIE-seq
single-cell_human_Hela_bedfiles.tar.gz
2.5 GBsingle-cell_human_Hela (bundled)cell linesingle-cell FOODIE
single-cell_human_HEK293T_bedfiles.tar.gz
2.8 GBsingle-cell_human_HEK293T (bundled)cell linesingle-cell FOODIE
single-cell_human_GM_bedfiles.tar.gz
3.4 GBsingle-cell_human_GM12878 (bundled)cell linesingle-cell FOODIE
single-cell_human_K562_bedfiles.tar.gz
951 MBsingle-cell_human_K562 (bundled)cell linesingle-cell FOODIE
GM12878_cooperativity.xlsx
391 KBGM12878 (cooperativity)cell linebulk FOODIE-seq